PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G035900.1
Common NameB456_003G035900, LOC105787737
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 338aa    MW: 38319.3 Da    PI: 4.8999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G035900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.3e-12170213654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Gorai.003G035900.1 170 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 213
                         589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-15167233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9170213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-16171228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.26E-5171217No hitNo description
CDDcd048730.007263304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MELSQHGFLE ELMAAAPRRD SWTTFSNGVT EFFPNGWNFE SFDATPPNLA FLGFSTTTTD  60
EIENPSFECP FSDQPYPFGD GFSVSEMDAS TSPFPPAHED YPSMVDDEDQ LGLLTTDHHH  120
QQQHSLEEMK HSCKVEMEQT INNIQGFNMG LFVEKKTKAK RLEGQPSKNL MAERRRRKRL  180
NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLEKVNKL KEDKTKLGSN HLSLMNNMKE  240
LKPNEMLVRN SPKFDVERRE TDTRIDIQCA TKPGLLLSTV NTLEALGLEI QECVISCFND  300
FSMQASCSEV AEQRTLMSTE DIKQALFRNA GYGGTCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469730.10.0PREDICTED: transcription factor bHLH93 isoform X1
SwissprotQ9LSL16e-90BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0D2MIX30.0A0A0D2MIX3_G
STRINGVIT_00s1312g00010.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-82beta HLH protein 93
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]